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DanteR: An extensible R-based tool for quantitative analysis of -omics data

journal contribution
posted on 2023-05-17, 13:55 authored by Taverner, T, Karpievitch, YV, Polpitiya, AD, Brown, JN, Dabney, AR, Anderson, GA, Smith, RD

Motivation: The size and complex nature of mass spectrometry-based proteomics datasets motivate development of specialized soft-ware for statistical data analysis and exploration. We present DanteR, a graphical R package that features extensive statistical and diagnostic functions for quantitative proteomics data analysis, including normalization, imputation, hypothesis testing, interactive visualization and peptide-to-protein rollup. More importantly, users can easily extend the existing functionality by including their own algorithms under the Add-On tab.

Availability: DanteR and its associated user guide are available for download free of charge at http://omics.pnl.gov/software/. We have an updated binary source for the DanteR package up on our website together with a vignettes document. For Windows, a single click automatically installs DanteR along with the R programming environment. For Linux and Mac OS X, users must install R and then follow instructions on the DanteR website for package installation.

History

Publication title

Bioinformatics

Volume

28

Issue

18

Pagination

2404-2406

ISSN

1367-4803

Department/School

School of Natural Sciences

Publisher

Oxford Univ Press

Place of publication

Great Clarendon St, Oxford, England, Ox2 6Dp

Rights statement

Copyright The Author 2012. Published by Oxford University Press. All rights reserved.

Repository Status

  • Restricted

Socio-economic Objectives

Expanding knowledge in the mathematical sciences

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