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DanteR: An extensible R-based tool for quantitative analysis of -omics data
journal contributionposted on 2023-05-17, 13:55 authored by Taverner, T, Karpievitch, YV, Polpitiya, AD, Brown, JN, Dabney, AR, Anderson, GA, Smith, RD
Motivation: The size and complex nature of mass spectrometry-based proteomics datasets motivate development of specialized soft-ware for statistical data analysis and exploration. We present DanteR, a graphical R package that features extensive statistical and diagnostic functions for quantitative proteomics data analysis, including normalization, imputation, hypothesis testing, interactive visualization and peptide-to-protein rollup. More importantly, users can easily extend the existing functionality by including their own algorithms under the Add-On tab.Availability: DanteR and its associated user guide are available for download free of charge at http://omics.pnl.gov/software/. We have an updated binary source for the DanteR package up on our website together with a vignettes document. For Windows, a single click automatically installs DanteR along with the R programming environment. For Linux and Mac OS X, users must install R and then follow instructions on the DanteR website for package installation.
Department/SchoolSchool of Natural Sciences
PublisherOxford Univ Press
Place of publicationGreat Clarendon St, Oxford, England, Ox2 6Dp
Rights statementCopyright The Author 2012. Published by Oxford University Press. All rights reserved.